Stem-loop dre-mir-125a-1

Accession

MI0001972

Description

Danio rerio dre-mir-125a-1 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

14 open access papers mention dre-mir-125a-1
(54 sentences)

Sequence

12800 reads, 1071 reads per million, 10 experiments

guaugucucuuugUCCCUGAGACCCUUAACCUGUGaggucaaacuaggucacaggugagguccucaggaacagggcugcaugc
((((((..((((((.((((((..(((((.(((((((............))))))))))))..)))))).))))))..))))))

Structure

      cu      C      AC     A       gguca 
guaugu  cuuugU CCUGAG  CCUUA CCUGUGa     a
||||||  |||||| ||||||  ||||| |||||||      
cguacg  gggaca ggacuc  ggagu ggacacu     a
      uc      a      cu     -       ggauc 

Annotation confidence High

Genome context

chr16: 24898171-24898253 [+]

Mature dre-miR-125a

• Accession: MIMAT0001820
• Description: Danio rerio dre-miR-125a mature miRNA
• Sequence: 14 - UCCCUGAGACCCUUAACCUGUG - 35
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293