Stem-loop dre-mir-125a-2

Accession

MI0001973

Description

Danio rerio dre-mir-125a-2 precursor miRNA

Literature search

14 open access papers mention dre-mir-125a-2
(53 sentences)

Sequence

5126997 reads, 5068.0 reads per million, 302 experiments

gaucaguccaaaucgauguaugucugugUCCCUGAGACCCUUAACCUGUGAugucuuccaaggucaCAGGUGAGGUCCUUGGGAACAcggcuguauaugaugacguc
.....(((...(((.(((((((.((((((.((((((..(((((.((((((((.(......).)))))))))))))..)))))).)))))).)))))))))))))...

Structure

gauca   caa   g       u      C      AC     A        g cu 
     guc   auc auguaug cugugU CCUGAG  CCUUA CCUGUGAu u  u
     |||   ||| ||||||| |||||| ||||||  ||||| |||||||| |   
     cag   uag uauaugu ggcACA GGGUUC  GGAGU GGACacug a  c
--cug   ---   -       c      A      CU     -        g ac 

Annotation confidence High

Genome context

chr19: 9443772-9443878 [+]

Mature dre-miR-125a-5p

• Accession: MIMAT0001820
• Description: Danio rerio dre-miR-125a-5p mature miRNA
• Sequence: 29 - UCCCUGAGACCCUUAACCUGUGA - 51
• Evidence: experimental ; cloned [1]

Mature dre-miR-125a-2-3p

• Accession: MIMAT0060887
• Description: Danio rerio dre-miR-125a-2-3p mature miRNA
• Sequence: 67 - CAGGUGAGGUCCUUGGGAACA - 87
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293