Stem-loop dre-mir-125a-2

Accession

MI0001973

Description

Danio rerio dre-mir-125a-2 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

14 open access papers mention dre-mir-125a-2
(54 sentences)

Sequence

12841 reads, 1084 reads per million, 10 experiments

gaucaguccaaaucgauguaugucugugUCCCUGAGACCCUUAACCUGUGaugucuuccaaggucacaggugagguccuugggaacacggcuguauaugaugacguc
.....(((...(((.(((((((.((((((.((((((..(((((.((((((((.(......).)))))))))))))..)))))).)))))).)))))))))))))...

Structure

gauca   caa   g       u      C      AC     A        g cu 
     guc   auc auguaug cugugU CCUGAG  CCUUA CCUGUGau u  u
     |||   ||| ||||||| |||||| ||||||  ||||| |||||||| |   
     cag   uag uauaugu ggcaca ggguuc  ggagu ggacacug a  c
--cug   ---   -       c      a      cu     -        g ac 

Annotation confidence High

Genome context

chr19: 9443772-9443878 [+]

Mature dre-miR-125a

• Accession: MIMAT0001820
• Description: Danio rerio dre-miR-125a mature miRNA
• Sequence: 29 - UCCCUGAGACCCUUAACCUGUG - 50
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293