Stem-loop dre-mir-125b-3

Accession

MI0001977

Description

Danio rerio dre-mir-125b-3 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

24 open access papers mention dre-mir-125b-3
(190 sentences)

Sequence

11154 reads, 908 reads per million, 11 experiments

cccgugcggccaccgcugcacuccuccuggUCCCUGAGACCCUAACUUGUGAgcuuugugugcuaaaaaucACAGGUUAAGCUCUUGGGACCUgggcagagggcaaaagcacugg
((.((((.....((.((((......((.((((((.((((.(.((((((((((..((((.....))))..)))))))))).).)))))))))).)))))).))......)))).))

Structure

  c    -ggcca  g    acuccu  u      U    C C          gc    u 
cc gugc      cc cugc      cc ggUCCC GAGA C UAACUUGUGA  uuug g
|| ||||      || ||||      || |||||| |||| | ||||||||||  |||| u
gg cacg      gg gacg      gg CCAGGG UUCU G AUUGGACAcu  aaau g
  u    aaaacg  a    ------  U      -    C A          aa    c 

Annotation confidence High

Genome context

chr10: 38051652-38051766 [-]

Mature dre-miR-125b-5p

• Accession: MIMAT0001821
• Description: Danio rerio dre-miR-125b-5p mature miRNA
• Sequence: 31 - UCCCUGAGACCCUAACUUGUGA - 52
• Evidence: experimental ; cloned [1]

Mature dre-miR-125b-3-3p

• Accession: MIMAT0031965
• Description: Danio rerio dre-miR-125b-3-3p mature miRNA
• Sequence: 72 - ACAGGUUAAGCUCUUGGGACCU - 93
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293