Stem-loop dre-mir-125c

Accession

MI0001978

Description

Danio rerio dre-mir-125c precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

11 open access papers mention dre-mir-125c
(118 sentences)

Sequence

3267 reads, 228 reads per million, 11 experiments

gcucuccuccuguUCCCUGAGACCCUAACUCGUGAggucuuuuuccaaaaucACGGGUCAGGAGCUUGGGAGACagguggagggc
(((((((.((((((.((((((..(((.((((((((((.......))....)))))))).)))..)))))).)))))).)))))))

Structure

       u      C      AC   A        ----  uc 
gcucucc ccuguU CCUGAG  CCU ACUCGUGA    gg  u
||||||| |||||| ||||||  ||| ||||||||    ||  u
cgggagg ggaCAG GGGUUC  GGA UGGGCAcu    cc  u
       u      A      GA   C        aaaa  uu 

Annotation confidence High

Genome context

chr15: 29800968-29801052 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-125c

Mature dre-miR-125c-5p

• Accession: MIMAT0001822
• Description: Danio rerio dre-miR-125c-5p mature miRNA
• Sequence: 14 - UCCCUGAGACCCUAACUCGUGA - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-125c-3p

• Accession: MIMAT0031966
• Description: Danio rerio dre-miR-125c-3p mature miRNA
• Sequence: 53 - ACGGGUCAGGAGCUUGGGAGAC - 74
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293