Stem-loop dre-mir-128-1

Accession

MI0001980

Description

Danio rerio dre-mir-128-1 precursor miRNA

Gene family

MIPF0000048; mir-128

Literature search

5 open access papers mention dre-mir-128-1
(9 sentences)

Sequence

4930 reads, 268 reads per million, 11 experiments

uggaggaggagugcugggagaCGGGGCCGUGGCACUGUAUGAGAuucauguaggcuuucUCACAGUGAACCGGUCUCUUUUuccagcccucacugaca
((..((..(((.(((((((((.(((((((...((((((..((((.((.....)).))))..))))))...))))))).))))))))).))).))..))

Structure

  ga  ag   u         C       UGG      AU    u  a 
ug  gg  gag gcugggaga GGGGCCG   CACUGU  GAGA uc u
||  ||  ||| ||||||||| |||||||   ||||||  |||| || g
ac  uc  cuc cgaccuUUU CUCUGGC   GUGACA  cuuu gg u
  ag  -a   c         U       CAA      CU    c  a 

Annotation confidence High

Genome context

chr22: 12374786-12374883 [+]

Mature dre-miR-128-3p

• Accession: MIMAT0001824
• Description: Danio rerio dre-miR-128-3p mature miRNA
• Sequence: 60 - UCACAGUGAACCGGUCUCUUUU - 81
• Evidence: experimental ; cloned [1]

Mature dre-miR-128-5p

• Accession: MIMAT0031967
• Description: Danio rerio dre-miR-128-5p mature miRNA
• Sequence: 22 - CGGGGCCGUGGCACUGUAUGAGA - 44
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293