Stem-loop dre-mir-130a

Accession

MI0001984

Description

Danio rerio dre-mir-130a precursor miRNA

Literature search

25 open access papers mention dre-mir-130a
(166 sentences)

Sequence

463753 reads, 369.0 reads per million, 276 experiments

ugucuguccaguGCCCCUUUUAUAUUGUACUACUgauaacccaguuauuaaagCAGUGCAAUGUUAAAAGGGCAUuggccaggga
..((((.(((((((((.(((.((((((((((.((((((((...))))))..)).)))))))))).))).))))))))).))))..

Structure

ug    u         C   U          A  --      c 
  ucug ccaguGCCC UUU AUAUUGUACU CU  gauaac  
  |||| ||||||||| ||| |||||||||| ||  |||||| c
  ggac gguUACGGG AAA UGUAACGUGA ga  uuauug  
ag    c         A   U          C  aa      a 

Annotation confidence High

Genome context

chr10: 33377130-33377214 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-130a

Mature dre-miR-130a-5p

• Accession: MIMAT0060888
• Description: Danio rerio dre-miR-130a-5p mature miRNA
• Sequence: 13 - GCCCCUUUUAUAUUGUACUACU - 34
• Evidence: experimental ; cloned [1]

Mature dre-miR-130a-3p

• Accession: MIMAT0001826
• Description: Danio rerio dre-miR-130a-3p mature miRNA
• Sequence: 54 - CAGUGCAAUGUUAAAAGGGCAU - 75
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293