miRBase entry: dre-mir-130b

Stem-loop dre-mir-130b

Accession

MI0001986

Description

Danio rerio dre-mir-130b precursor miRNA

Literature search

6 open access papers mention dre-mir-130b
(9 sentences)

Sequence

24809 reads, 936 reads per million, 11 experiments

cuguugccugacacucuuucccuguugcacuacugugggagcugcagcaaagCAGUGCAAUAAUGAAAGGGCAUcaguccacug
..((.(.((((..(((((((..(((((((((.((((((...))))))......)))))))))..)))))))..)))).).))..

Structure

cu  u c    ca       cc         -----a      g 
  gu g cuga  cucuuuc  uguugcacu      cugugg  
  || | ||||  |||||||  |||||||||      |||||| a
  ca c gacU  GGGAAAG  AUAACGUGA      gacguc  
gu  c u    AC       UA         Cgaaac      g

Annotation confidence High

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Genome context

chr5: 13299331-13299414 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-130b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-130b

Accession	MIMAT0001827
Description	Danio rerio dre-miR-130b mature miRNA
Sequence	53 - CAGUGCAAUAAUGAAAGGGCAU - 74
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293