miRBase entry: dre-mir-130c-2

Stem-loop dre-mir-130c-2


Accession
MI0001988
Description
Danio rerio dre-mir-130c-2 precursor miRNA

Literature search
5 open access papers mention dre-mir-130c-2
(12 sentences)

Sequence

31650 reads, 1222 reads per million, 11 experiments
uuguugaccaggGCCCUUUUUCUGUUGUACUACUgugcagucagaugagCAGUGCAAUAUUAAAAGGGCAUuggcugacaa
.(((((.((((.((((((((..((((((...(((((.((......)).)))))))))))..)))))))).)))).))))).

Structure
u     a    g        UC      ACU     g  gu 
 uguug ccag GCCCUUUU  UGUUGU   ACUgu ca  c
 ||||| |||| ||||||||  ||||||   ||||| ||   
 acagu gguU CGGGAAAA  AUAACG   UGACg gu  a
a     c    A        UU      ---     a  ag 


Annotation confidence High
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Genome context
chr5: 13288828-13288908 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-130c-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-130c-3p

Accession MIMAT0001828
Description Danio rerio dre-miR-130c-3p mature miRNA
Sequence 50 - CAGUGCAAUAUUAAAAGGGCAU - 71
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-130c-5p

Accession MIMAT0031969
Description Danio rerio dre-miR-130c-5p mature miRNA
Sequence 13 - GCCCUUUUUCUGUUGUACUACU - 34
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293