Stem-loop dre-mir-132-2

Accession

MI0001991

Description

Danio rerio dre-mir-132-2 precursor miRNA

Literature search

9 open access papers mention dre-mir-132-2
(150 sentences)

Sequence

571 reads, 49 reads per million, 9 experiments

ucccuuccucugcugucuccaugcugaccguggcuuuagauuguuacuguagcguuggcacguggUAACAGUCUACAGCCAUGGUCGccaaggggcagguguuacagcgacuacuggga
((((......((((((((((.((.(((((((((((.((((((((((((((.((....))))..)))))))))))).))))))))))).)).))))........))))))......))))

Structure

    uuccuc      --------    a  c           u            --  a  g 
uccc      ugcugu        cucc ug ugaccguggcu uagauuguuacu  gu gc u
||||      ||||||        |||| || ||||||||||| ||||||||||||  || ||  
aggg      gcgaca        gggg ac GCUGGUACCGA AUCUGACAAUgg  ca cg u
    ucauca      uuguggac    a  c           C            ug  -  g 

Annotation confidence High

Genome context

chr10: 35645017-35645135 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-132-2

Mature dre-miR-132-3p

• Accession: MIMAT0001829
• Description: Danio rerio dre-miR-132-3p mature miRNA
• Sequence: 66 - UAACAGUCUACAGCCAUGGUCG - 87
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293