Stem-loop dre-mir-133b

Accession

MI0001994

Description

Danio rerio dre-mir-133b precursor miRNA

Literature search

27 open access papers mention dre-mir-133b
(359 sentences)

Sequence

5125 reads, 377 reads per million, 6 experiments

cacgccuugcugugGCUGGUCAAAUGGAACCAAGUCagguguuucugcgaggUUUGGUCCCCUUCAACCAGCUAcugcgucgug
((((...(((.(((((((((..((.((.((((((((..((......))..)))))))).)).))..))))))))).))).))))

Structure

    ccu   u         CA  U  A        ag  gu 
cacg   ugc gugGCUGGU  AA GG ACCAAGUC  gu  u
||||   ||| |||||||||  || || ||||||||  ||   
gugc   gcg cAUCGACCA  UU CC UGGUUUgg  cg  u
    --u   u         AC  C  C        ag  uc 

Annotation confidence High

Genome context

chr20: 19543379-19543462 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-133b

Mature dre-miR-133b-5p

• Accession: MIMAT0003405
• Description: Danio rerio dre-miR-133b-5p mature miRNA
• Sequence: 15 - GCUGGUCAAAUGGAACCAAGUC - 36
• Evidence: experimental ; cloned [1]

Mature dre-miR-133b-3p

• Accession: MIMAT0001831
• Description: Danio rerio dre-miR-133b-3p mature miRNA
• Sequence: 53 - UUUGGUCCCCUUCAACCAGCUA - 74
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293