Stem-loop dre-mir-135c-1

Accession

MI0001996

Description

Danio rerio dre-mir-135c-1 precursor miRNA

Literature search

5 open access papers mention dre-mir-135c-1
(12 sentences)

Sequence

128 reads, 36 reads per million, 5 experiments

ugcuguguuuUAUGGCUUUCUAUUCCUAUGUGauuuucuucugccgugucacauaggguucaaagccauuggguacagag
..((((((((.((((((((....(((((((((((.............)))))))))))...)))))))).))))))))..

Structure

ug        U        CUAU           uuucu 
  cuguguuu AUGGCUUU    UCCUAUGUGau     u
  |||||||| ||||||||    |||||||||||     c
  gacauggg uaccgaaa    gggauacacug     u
ga        u        -cuu           ugccg 

Annotation confidence Not enough data

Genome context

chr11: 38175071-38175150 [-]

Mature dre-miR-135c

• Accession: MIMAT0001833
• Description: Danio rerio dre-miR-135c mature miRNA
• Sequence: 11 - UAUGGCUUUCUAUUCCUAUGUG - 32
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293