Stem-loop dre-mir-135c-2

Accession

MI0001997

Description

Danio rerio dre-mir-135c-2 precursor miRNA

Literature search

5 open access papers mention dre-mir-135c-2
(12 sentences)

Sequence

117 reads, 33 reads per million, 5 experiments

ugcagucuaaagcaacucaaaacacuacugugcuuUAUGGCUUUCUAUUCCUAUGUGauuuugauaugauguaucauguaggguucaaagccauuagguacagaguggcuuaucagcaguggaugua
((((.((((..((.........((((.((((((((.((((((((....(((((((((((.............)))))))))))...)))))))).))))))))))))........))..))))))))

Structure

    g    aa  aacucaaaa    a        U        CUAU           uuuga 
ugca ucua  gc         cacu cugugcuu AUGGCUUU    UCCUAUGUGau     u
|||| ||||  ||         |||| |||||||| ||||||||    |||||||||||     a
augu aggu  cg         guga gacaugga uaccgaaa    gggauguacua     u
    -    ga  -acuauucg    -        u        -cuu           uguag 

Annotation confidence Not enough data

Genome context

chr23: 18063173-18063299 [-]

Mature dre-miR-135c

• Accession: MIMAT0001833
• Description: Danio rerio dre-miR-135c mature miRNA
• Sequence: 36 - UAUGGCUUUCUAUUCCUAUGUG - 57
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293