Stem-loop dre-mir-454a

Accession

MI0002074

Description

Danio rerio dre-mir-454a precursor miRNA mir-454

Gene
family

RF00746; mir-454

Literature search

1 open access papers mention dre-mir-454a
(1 sentences)

Sequence

2725 reads, 132 reads per million, 11 experiments

uugcaggucguuuaagaauuaauccuaauucuugggacccuaucaguauugccucugcuguccacuguguucagagUAGUGCAAUAUUGCUAAUAGGGuuuuagguuuuagguuguaccuucag
.((.((((...............(((((..((((((((((((((((((((((..(((((.....(((....)))))))).)))))))))...)))))))))))))..)))))....)))).)).

Structure

u  c    cguuuaagaauuaau     uu             ---         cu     gucca   u 
 ug aggu               ccuaa  cuugggacccuau   caguauugc  cugcu     cug g
 || ||||               |||||  |||||||||||||   |||||||||  |||||     |||  
 ac ucca               ggauu  ggauuuuGGGAUA   GUUAUAACG  GAUga     gac u
g  u    -----------uguu     uu             AUC         -U     -----   u 

Annotation confidence Not enough data

Genome context

chr10: 33376818-33376941 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-454a

Mature dre-miR-454a

• Accession: MIMAT0001877
• Description: Danio rerio dre-miR-454a mature miRNA
• Sequence: 77 - UAGUGCAAUAUUGCUAAUAGGG - 98
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293