miRBase entry: dre-mir-430c-3

Stem-loop dre-mir-430c-3


Accession
MI0002080
Description
Danio rerio dre-mir-430c-3 precursor miRNA miR-430
Gene
family?
RF01413; miR-430

Literature search
38 open access papers mention dre-mir-430c-3
(196 sentences)

Sequence

3612554 reads, 117821 reads per million, 5 experiments
auuaagauCACUUCAAACAGGAGCAUUGAuuuguccuuuguucaUAAGUGCUUCUCUUUGGGGUAGuuuuaau
((((((((.((((((((.(((((((((...................))))))))).)))))))).))))))))

Structure
        C        C         GAuuuguc 
auuaagau ACUUCAAA AGGAGCAUU        c
|||||||| |||||||| |||||||||        u
uaauuuuG UGGGGUUU UCUUCGUGA        u
        A        C         AUacuugu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr4: 28695113-28695185 [+]
Clustered miRNAs
41 other miRNAs are < 10 kb from dre-mir-430c-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-430c-3p

Accession MIMAT0001425
Description Danio rerio dre-miR-430c-3p mature miRNA
Sequence 45 - UAAGUGCUUCUCUUUGGGGUAG - 66
Evidence experimental
cloned [1-2]
Database links
Predicted targets

Mature dre-miR-430c-5p

Accession MIMAT0031929
Description Danio rerio dre-miR-430c-5p mature miRNA
Sequence 9 - CACUUCAAACAGGAGCAUUGA - 29
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293

  2. PubMed ID: 15774722
    MicroRNAs regulate brain morphogenesis in zebrafish
    "Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF"
    "Science (2005) 308:833-838