Stem-loop ptc-MIR159e

Accession

MI0002199

Description

Populus trichocarpa ptc-MIR159e precursor miRNA

Literature search

9 open access papers mention ptc-MIR159e
(47 sentences)

Sequence

accauuaaauaggagcuugcucacuccagaucugaaaggaggugauaggaaaccacuucugcuacuucaugaauacccgugggugugcgcguagccauggugagcugcgcaggcuaagggucugcaugugcuaggagaugugguugccuugaucuuuuugguCUUGGGGUGAAGGGAGCUCCUauaguccca
........((((((((((.(((((((((((((...((((((((.(.(((.((((((.(((.(((...((((...((((...(((.(((((..(((((...)).)))))))).)))..))))...))))...))).))).)))))).)))).)))))))))))).))))))).)).)))))))))).......

Structure

accauuaa          g  -       -    uga        g u   a      u   g   cuu    aau    gug   g     gu   -  u 
        auaggagcuu cu cacucca gauc   aaggaggu a agg aaccac ucu cua   caug   accc   ggu ugcgc  agc ca  
        |||||||||| || ||||||| ||||   |||||||| | ||| |||||| ||| |||   ||||   ||||   ||| |||||  ||| || g
        uaUCCUCGAG GA GUGGGGU Cugg   uuuuucua u ucc uuggug aga gau   guac   uggg   ucg acgcg  ucg gu  
-acccuga          G  A       U    ---        g -   g      u   g   cgu    guc    -aa   g     --   a  g 

Annotation confidence Not enough data

Genome context

CM000350.2: 6601853-6602044 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptc-MIR159e

Mature ptc-miR159e

• Accession: MIMAT0001905
• Description: Populus trichocarpa ptc-miR159e mature miRNA
• Sequence: 163 - CUUGGGGUGAAGGGAGCUCCU - 183
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604