Stem-loop ptc-MIR169ad

Accession

MI0002249

Description

Populus trichocarpa ptc-MIR169ad precursor miRNA

Literature search

9 open access papers mention ptc-MIR169ad
(12 sentences)

Sequence

guuguucggUAGCCAAGGACGACUUGCCCAcacuaugagacaagugguuagaauuagcaacuucuuaauugguuaugggaagucuccuuggcuaugcugac
.....((((((((((((((.(((((.((((.(((((((((..(((.((((....)))).))))))))..))))..))))))))))))))))))..))))).

Structure

guugu     --         C     G    -c    --     ca   g    g 
     ucggU  AGCCAAGGA GACUU CCCA  acua  ugaga  agu guua a
     |||||  ||||||||| ||||| ||||  ||||  |||||  ||| ||||  
     agucg  ucgguuccu cugaa gggu  uggu  auucu  uca cgau a
----c     ua         -     -    au    ua     --   a    u 

Annotation confidence Not enough data

Genome context

CM000343.2: 6019640-6019740 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptc-MIR169ad

Mature ptc-miR169ad

• Accession: MIMAT0001955
• Description: Populus trichocarpa ptc-miR169ad mature miRNA
• Sequence: 10 - UAGCCAAGGACGACUUGCCCA - 30
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604