Stem-loop ptc-MIR169g

Accession

MI0002257

Description

Populus trichocarpa ptc-MIR169g precursor miRNA

Literature search

9 open access papers mention ptc-MIR169g
(12 sentences)

Sequence

gaguagaaugCAGCCAAGGAUGACUUGCCGGcauuuccuccuagguagcuagcaagccuucuauuuggcaugccuguccggcagguuguccuuggcuaaauuuugu
...((((((..((((((((((((((((((((((........(((....)))(((.(((........))).))).)).))))))))))))))))))))..)))))).

Structure

gag      gC                    -  uuuccuccuagguagcua   a   uuc 
   uagaau  AGCCAAGGAUGACUUGCCGG ca                  gca gcc   u
   ||||||  |||||||||||||||||||| ||                  ||| |||    
   guuuua  ucgguuccuguuggacggcc gu                  cgu cgg   a
--u      aa                    u  -----------------c   a   uuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR169g

• Accession: MIMAT0001963
• Description: Populus trichocarpa ptc-miR169g mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGG - 31
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604