Stem-loop ptc-MIR169r

Accession

MI0002268

Description

Populus trichocarpa ptc-MIR169r precursor miRNA

Literature search

9 open access papers mention ptc-MIR169r
(12 sentences)

Sequence

gaggguuuggUAGCCAAGGAUGACUUGCCUAuuuccuccauaaggcuuuaaaaagcaugaaaugugguuuagagcucaauugaaggguucauaggcagucuacuuugguuauccuagcu
...((((.(((((((((((..((((.((((((.((((.((...(((((((((..((((...))))..)))))))))....)).))))...))))))))))..)))))))))))..))))

Structure

gag    -u           AU    U      --u    c  -uaa         aa    g 
   gguu  ggUAGCCAAGG  GACU GCCUAu   uccu ca    ggcuuuaaa  gcau  
   ||||  |||||||||||  |||| ||||||   |||| ||    |||||||||  |||| a
   ucga  cuauugguuuc  cuga cggaua   ggga gu    ucgagauuu  ugua  
---    uc           au    -      cuu    a  uaac         gg    a 

Annotation confidence Not enough data

Genome context

CM000351.2: 12082579-12082697 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR169r

Mature ptc-miR169r

• Accession: MIMAT0001974
• Description: Populus trichocarpa ptc-miR169r mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUA - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604