miRBase entry: ptc-MIR169t

Stem-loop ptc-MIR169t


Accession
MI0002270
Description
Populus trichocarpa ptc-MIR169t precursor miRNA MIR169_3
Gene
family?
RF04243; MIR169_3

Literature search
9 open access papers mention ptc-MIR169t
(12 sentences)

Sequence

cuagaguccGAGCCAAGAAUGACUUGCCGGcaggcuagcauuugcuagcuacagggcaagauguaugcuaaagugacauuccgccagguuguucuuggcucuacuuug
.((((((..(((((((((((((((((.(((..(((((((....)))))))....((((.......))))...........))).))))))))))))))))).))))))

Structure
c      cc                 C   ----------------------------ca       a 
 uagagu  GAGCCAAGAAUGACUUG CGG                              ggcuagc u
 ||||||  ||||||||||||||||| |||                              |||||||  
 guuuca  cucgguucuuguuggac gcc                              ucgaucg u
-      -u                 c   uuacagugaaaucguauguagaacgggaca       u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000342.2: 5556636-5556743 [-]

Database links

Mature ptc-miR169t

Accession MIMAT0001976
Description Populus trichocarpa ptc-miR169t mature miRNA
Sequence 10 - GAGCCAAGAAUGACUUGCCGG - 30
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604