Stem-loop ssc-mir-105-1

Accession

MI0002410

Description

Sus scrofa ssc-mir-105-1 precursor miRNA

Literature search

1 open access papers mention ssc-mir-105-1
(1 sentences)

Sequence

9513 reads, 29.0 reads per million, 100 experiments

ugugcaucguagUCAAAUGCUCAGACUCCUGUgguggcugcucaugcaCCACGGAUGUUUGAGCAUGUGCUAcggugucua
...(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).)))))))))))...

Structure

ugu         U  A          UC        gcug 
   gcaucguag CA AUGCUCAGAC  CUGUggug    c
   ||||||||| || ||||||||||  ||||||||     
   uguggcAUC GU UACGAGUUUG  GGCACCac    u
auc         -  G          UA        guac 

Annotation confidence High

Genome context

chrX: 141091501-141091581 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-105-1

Mature ssc-miR-105-1-5p

• Accession: MIMAT0002116
• Description: Sus scrofa ssc-miR-105-1-5p mature miRNA
• Sequence: 13 - UCAAAUGCUCAGACUCCUGU - 32
• Evidence: experimental ; Illumina [2]

Mature ssc-miR-105-3p

• Accession: MIMAT0052544
• Description: Sus scrofa ssc-miR-105-3p mature miRNA
• Sequence: 49 - CCACGGAUGUUUGAGCAUGUGCUA - 72
• Evidence: experimental ; unknown

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328