Stem-loop ssc-mir-125b-2

Accession

MI0002414

Description

Sus scrofa ssc-mir-125b-2 precursor miRNA

Literature search

23 open access papers mention ssc-mir-125b-2
(155 sentences)

Sequence

13919887 reads, 11945.0 reads per million, 214 experiments

accagacuuuuccuagUCCCUGAGACCCUAACUUGUGAgguauuuuaguaacaucACAAGUCAGGCUCUUGGGACCUaggcggagggga
.((...((((.(((((((((.((((.(((.((((((((.((.........)).)))))))).))).)))))))).))))).)))).)).

Structure

a  aga    u     -    U    C   A        g  auu 
 cc   cuuu ccuag UCCC GAGA CCU ACUUGUGA gu   u
 ||   |||| ||||| |||| |||| ||| |||||||| ||   u
 gg   gagg ggaUC AGGG UUCU GGA UGAACAcu ca   a
a  --g    c     C    -    C   C        a  aug 

Annotation confidence High

Genome context

Unknown

Mature ssc-miR-125b-5p

• Accession: MIMAT0002120
• Description: Sus scrofa ssc-miR-125b-5p mature miRNA
• Sequence: 17 - UCCCUGAGACCCUAACUUGUGA - 38
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-125b-2-3p

• Accession: MIMAT0052546
• Description: Sus scrofa ssc-miR-125b-2-3p mature miRNA
• Sequence: 56 - ACAAGUCAGGCUCUUGGGACCU - 77
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100