Stem-loop ssc-mir-183

Accession

MI0002439

Description

Sus scrofa ssc-mir-183 precursor miRNA

Literature search

19 open access papers mention ssc-mir-183
(42 sentences)

Sequence

743189 reads, 655.0 reads per million, 211 experiments

cugugUAUGGCACUGGUAGAAUUCACUGugaacagucucggucagUGAAUUACCGAAGGGCCAUAAacag
((((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).))))

Structure

    g      A  --    GA        --   ac 
cugu UAUGGC CU  GGUA  AUUCACUG  uga  a
|||| |||||| ||  ||||  ||||||||  |||   
gaca AUACCG GA  CCAU  UAAGUgac  gcu  g
    A      G  AG    --        ug   cu 

Annotation confidence High

Genome context

chr18: 20030651-20030720 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-mir-183

Mature ssc-miR-183-5p

• Accession: MIMAT0002145
• Description: Sus scrofa ssc-miR-183-5p mature miRNA
• Sequence: 6 - UAUGGCACUGGUAGAAUUCACUG - 28
• Evidence: experimental ; Illumina [2-3]

Mature ssc-miR-183-3p

• Accession: MIMAT0052568
• Description: Sus scrofa ssc-miR-183-3p mature miRNA
• Sequence: 46 - UGAAUUACCGAAGGGCCAUAA - 66
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100