Stem-loop ssc-mir-9-2

Accession

MI0002463

Description

Sus scrofa ssc-mir-9-2 precursor miRNA

Literature search

13 open access papers mention ssc-mir-9-2
(63 sentences)

Sequence

7842101 reads, 12051.0 reads per million, 205 experiments

ggaagcgaguuguuaUCUUUGGUUAUCUAGCUGUAUGAguguauuggucuucAUAAAGCUAGAUAACCGAAAGUAaaaacuccuuca
.((((.(((((.((((.(((((((((((((((.((((((.(.......))))))).))))))))))))))).)))).))))))))).

Structure

g    c     g    C               G      u ua 
 gaag gaguu uuaU UUUGGUUAUCUAGCU UAUGAg g  u
 |||| ||||| |||| ||||||||||||||| |||||| |  u
 cuuc cucaa aAUG AAGCCAAUAGAUCGA AUAcuu c  g
a    -     a    A               A      - ug 

Annotation confidence High

Genome context

chr2: 98744572-98744658 [-]

Mature ssc-miR-9-2-5p

• Accession: MIMAT0002169
• Description: Sus scrofa ssc-miR-9-2-5p mature miRNA
• Sequence: 16 - UCUUUGGUUAUCUAGCUGUAUGA - 38
• Evidence: experimental ; 454 [2], Illumina [3-4]

Mature ssc-miR-9-3p

• Accession: MIMAT0052587
• Description: Sus scrofa ssc-miR-9-3p mature miRNA
• Sequence: 53 - AUAAAGCUAGAUAACCGAAAGUA - 75
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 19196471
   Cloning, characterization and expression analysis of porcine microRNAs
   Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
   BMC Genomics (2009) 10:65


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100