Stem-loop ppy-mir-133a

Accession

MI0002531

Description

Pongo pygmaeus ppy-mir-133a precursor miRNA

Sequence

acaaugcuuugcuagagcugguaaaauggaaccaaaucgccucuucaauggauUUGGUCCCCUUCAACCAGCUGuagcuaugcauuga
.((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).

Structure

a      uuu    g       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgau UCGACCA  UU CC UGGUUuag     u
a      uau    G       AC  C  C        guaac 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

NW_002964517.1: 15590-15677 [-]

Mature ppy-miR-133a

• Accession: MIMAT0002242
• Description: Pongo pygmaeus ppy-miR-133a mature miRNA
• Sequence: 54 - UUGGUCCCCUUCAACCAGCUG - 74
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24