miRBase entry: ppy-mir-144

Stem-loop ppy-mir-144

Accession

MI0002555

Description

Pongo pygmaeus ppy-mir-144 precursor miRNA

Sequence

uggggcccuggcugggauaucaucauauacuguaaguuugcgaugagacacUACAGUAUAGAUGAUGUACUAGucugggcaccccc
.(((((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).)))).)))..

Structure

-u   -    u      g        a         -a    gc 
  ggg gccc ggcugg auaucauc uauacugua  guuu  g
  ||| |||| |||||| |||||||| |||||||||  ||||   
  ccc cggg cuGAUC UGUAGUAG AUAUGACAU  caga  a
cc   a    u      A        -         ca    gu

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr17: 23605784-23605869 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-144

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-144

Accession	MIMAT0002263
Description	Pongo pygmaeus ppy-miR-144 mature miRNA
Sequence	52 - UACAGUAUAGAUGAUGUACUAG - 73
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24