miRBase entry: ppy-mir-145

Stem-loop ppy-mir-145

Accession

MI0002561

Description

Pongo pygmaeus ppy-mir-145 precursor miRNA

Sequence

caccuuguccucacgGUCCAGUUUUCCCAGGAAUCCCUUagaugcuaagauggggauuccuggaaauacuguucuugaggucaugguu
.(((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).))))..))))))).)).))).

Structure

c   u  u     c  UC    U  C            Uagau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagu uc  guca aa gguccuuagggg     u
u   u  u     -  uu    u  a            uagaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr5: 151352993-151353080 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-145

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-145

Accession	MIMAT0002269
Description	Pongo pygmaeus ppy-miR-145 mature miRNA
Sequence	16 - GUCCAGUUUUCCCAGGAAUCCCUU - 39
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24