Stem-loop ppy-mir-153-1

Accession

MI0002564

Description

Pongo pygmaeus ppy-mir-153-1 precursor miRNA

Sequence

cucacagcugccagugucauuuuugugaucugcagcuaguauucucacuccagUUGCAUAGUCACAAAAGUGAUCauuggcagguguggc
.(((((.((((((((((((((((((((((.((((((((((......)))..)))))))..))))))))))))).))))))))).))))).

Structure

c     g         -             -c       --   au 
 ucaca cugccagug ucauuuuugugau  ugcagcu  agu  u
 ||||| ||||||||| |||||||||||||  |||||||  |||   
 ggugu gacgguuaC AGUGAAAACACUG  ACGUUga  uca  c
c     g         U             AU       cc   cu 

Annotation confidence Low

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr2B: 111154492-111154581 [-]

Mature ppy-miR-153

• Accession: MIMAT0002272
• Description: Pongo pygmaeus ppy-miR-153 mature miRNA
• Sequence: 54 - UUGCAUAGUCACAAAAGUGAUC - 75
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24