miRBase entry: ppy-mir-134

Stem-loop ppy-mir-134

Accession

MI0002590

Description

Pongo pygmaeus ppy-mir-134 precursor miRNA

Sequence

cagggugUGUGACUGGUUGACCAGAGGGgcaugcacuguguucacccugugggccaccuagucaccaacccuc
.(((((..((((((((.((.(((.((((((((.....))))...)))).)))..)).))))))))..))))).

Structure

c     gU        U  -A   G    ---    g 
 agggu  GUGACUGG UG  CCA AGGG   gcau c
 |||||  |||||||| ||  ||| ||||   |||| a
 uccca  cacugauc ac  ggu uccc   ugug c
c     ac        c  cg   g    acu    u

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr14: 102616871-102616943 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from ppy-mir-134

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-134

Accession	MIMAT0002289
Description	Pongo pygmaeus ppy-miR-134 mature miRNA
Sequence	8 - UGUGACUGGUUGACCAGAGGG - 28
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24