miRBase entry: ppy-mir-136

Stem-loop ppy-mir-136

Accession

MI0002595

Description

Pongo pygmaeus ppy-mir-136 precursor miRNA

Sequence

ugagcccucggaggACUCCAUUUGUUUUGAUGAUGGAuucuuaugcuccaucaucgucucaaaugagucuucagaggguucu
.((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).)))))))).

Structure

u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuucugag uaaac   gcuacuaccu   a
u        a        -     ucu          cgu

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr14: 102430085-102430166 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppy-mir-136

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-136

Accession	MIMAT0002294
Description	Pongo pygmaeus ppy-miR-136 mature miRNA
Sequence	15 - ACUCCAUUUGUUUUGAUGAUGGA - 37
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24