miRBase entry: ppa-mir-154

Stem-loop ppa-mir-154

Accession

MI0002601

Description

Pan paniscus ppa-mir-154 precursor miRNA

Sequence

gugguacuugaagaUAGGUUAUCCGUGUUGCCUUCGcuuuauuugugacgaaucauacacgguugaccuauuuuucaguaccaa
.(((((((.((((((((((((.((((((((.(.((((.......)))).)...)).)))))).)))))))))))).))))))).

Structure

g       u            U      -  --C U    uu 
 ugguacu gaagaUAGGUUA CCGUGU UG   C UCGc  u
 ||||||| |||||||||||| |||||| ||   | ||||  a
 accauga uuuuuauccagu ggcaca ac   g agug  u
a       c            u      u  uaa c    uu

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr14: 100994025-100994108 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppa-mir-154

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppa-miR-154

Accession	MIMAT0002300
Description	Pan paniscus ppa-miR-154 mature miRNA
Sequence	15 - UAGGUUAUCCGUGUUGCCUUCG - 36
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24