Stem-loop ppy-mir-28

Accession

MI0002652

Description

Pongo pygmaeus ppy-mir-28 precursor miRNA

Sequence

gguccuugcccucAAGGAGCUCACAGUCUAUUGAGuuaccuuucugauuuucccacuagauugugagcuccuggagggcaggcacu
(((.(((((((((.((((((((((((((((.(((((((......)))))....)).)))))))))))))))).))))))))).)))

Structure

   c         A                U  ----     cc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuua  u
||| ||||||||| |||||||||||||||| ||    |||||   
uca ggacgggag uccucgaguguuagau ac    uuagu  u
   c         g                c  ccuu     cu 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr3: 192521779-192521864 [+]

Mature ppy-miR-28

• Accession: MIMAT0002355
• Description: Pongo pygmaeus ppy-miR-28 mature miRNA
• Sequence: 14 - AAGGAGCUCACAGUCUAUUGAG - 35
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24