Stem-loop ppy-mir-7-1

Accession

MI0002776

Description

Pongo pygmaeus ppy-mir-7-1 precursor miRNA

Sequence

uuggauguuggccuaguucugugUGGAAGACUAGUGAUUUUGUUguuuuuagauaacuaaaucgacaacaaaucacagucugccauauggcacaggccaugccucuacag
.((((.((((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).)))))))).)).))))...

Structure

--u    u  -      a  u        A     A       U      --     a 
   ugga gu uggccu gu cugugUGG AGACU GUGAUUU GUUguu  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguauacc ucuga cacuaaa caacag  aaauc a
gac    c  u      -  c        g     -       -      cu     a 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 79135649-79135758 [-]

Mature ppy-miR-7

• Accession: MIMAT0002480
• Description: Pongo pygmaeus ppy-miR-7 mature miRNA
• Sequence: 24 - UGGAAGACUAGUGAUUUUGUU - 44
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24