miRBase entry: ppy-mir-7-2

Stem-loop ppy-mir-7-2

Accession

MI0002782

Description

Pongo pygmaeus ppy-mir-7-2 precursor miRNA

Sequence

cuggauacagaguggaccggcuggccccgucUGGAAGACUAGUGAUUUUGUUguugucuuacugcgcucaacaacaaaucccagucugccuaauggugccagccaucgca
(((....))).((((...(((((((.((((..((.(((((.(.(((((.(((((((............))))))))))))).))))).))..)))).))))))).)))).

Structure

cuggauacaga    acc       c    cU  A     A U     U       ucuua 
           gugg   ggcuggc ccgu  GG AGACU G GAUUU GUUguug     c
           ||||   ||||||| ||||  || ||||| | ||||| |||||||      
           cgcu   ccgaccg ggua  cc ucuga c cuaaa caacaac     u
----------a    --a       u    au  g     c -     -       ucgcg

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr15: 85252446-85252555 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-7-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-7

Accession	MIMAT0002480
Description	Pongo pygmaeus ppy-miR-7 mature miRNA
Sequence	32 - UGGAAGACUAGUGAUUUUGUU - 52
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24