Stem-loop ggo-mir-7-3

Accession

MI0002786

Description

Gorilla gorilla ggo-mir-7-3 precursor miRNA

Literature search

1 open access papers mention ggo-mir-7-3
(8 sentences)

Sequence

5170 reads, 520.0 reads per million, 4 experiments

agauuggaguggcuguggucuagugcugugUGGAAGACUAGUGAUUUUGUUGUUcugauguacuacgaCAACAAGUCACAGCCGGCCUCAcagcgcagacucccuucgac
...((((((.((....(((((.((((((((.((..(.((.(((((((.((((((.((......)).))))))))))))))).)..)).))))))))))))))))))))).

Structure

aga      u  cugu     a        U  AA A  A       U      c  au 
   uuggag gg    ggucu gugcugug GG  G CU GUGAUUU GUUGUU ug  g
   |||||| ||    ||||| |||||||| ||  | || ||||||| |||||| ||   
   agcuuc cc    ucaga cgcgacAC CC  C GA CACUGAA CAACag au  u
--c      -  ----     -        U  GG C  -       -      c  ca 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr19: 4515836-4515945 [+]

Mature ggo-miR-7-5p

• Accession: MIMAT0002479
• Description: Gorilla gorilla ggo-miR-7-5p mature miRNA
• Sequence: 31 - UGGAAGACUAGUGAUUUUGUUGUU - 54
• Evidence: not_experimental

Mature ggo-miR-7-3-3p

• Accession: MIMAT0061261
• Description: Gorilla gorilla ggo-miR-7-3-3p mature miRNA
• Sequence: 69 - CAACAAGUCACAGCCGGCCUCA - 90
• Evidence: experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24