Stem-loop ppa-mir-10b

Accession

MI0002795

Description

Pan paniscus ppa-mir-10b precursor miRNA

Sequence

ccagagguuguaacguugucuauauaUACCCUGUAGAACCGAAUUUGUgugguauccguauagucacagauucgauucuaggggaauauauggucgaugcaaaaacuuca
...((((((....(((((.((((((((.((((.(((((.((((((((((.(.(((....))).))))))))))).))))))))).)))))))).)))))....)))))).

Structure

cca      guaa     u        A    G     C          u g   c 
   gagguu    cguug cuauauaU CCCU UAGAA CGAAUUUGUg g uau c
   ||||||    ||||| |||||||| |||| ||||| |||||||||| | |||  
   cuucaa    guagc gguauaua gggg aucuu gcuuagacac u aua g
--a      aaac     u        a    -     a          - g   u 

Annotation confidence Low

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr2B: 181138844-181138953 [+]

Mature ppa-miR-10b

• Accession: MIMAT0002493
• Description: Pan paniscus ppa-miR-10b mature miRNA
• Sequence: 27 - UACCCUGUAGAACCGAAUUUGU - 48
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24