miRBase entry: ppy-mir-182

Stem-loop ppy-mir-182

Accession

MI0002816

Description

Pongo pygmaeus ppy-mir-182 precursor miRNA

Sequence

cacagcugcuugccuucccccguuUUUGGCAAUGGUAGAACUCACAcuggugagguaacaggauccggugguucuagacuugccaacuauggggcgaggacucagccggcac
....((((((.(((((.((((((..(((((((...((((((...((((((..............))))))))))))...)))))))..)))))).)))).)..)).))))..

Structure

caca    -  -u -    c      uU       UGG      UCA      ugaggu 
    gcug cu  g ccuu ccccgu  UUGGCAA   UAGAAC   CAcugg      a
    |||| ||  | |||| ||||||  |||||||   ||||||   ||||||       
    cggc ga  c ggag ggggua  aaccguu   aucuug   guggcc      a
--ca    c  cu a    c      uc       cag      ---      uaggac

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 126686148-126686259 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppy-mir-182

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-182

Accession	MIMAT0002514
Description	Pongo pygmaeus ppy-miR-182 mature miRNA
Sequence	25 - UUUGGCAAUGGUAGAACUCACA - 46
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24