Stem-loop ppy-mir-218-2

Accession

MI0002878

Description

Pongo pygmaeus ppy-mir-218-2 precursor miRNA

Sequence

gaccagucgcuuaugcggggcuuuccuUUGUGCUUGAUCUAACCAUGUgguggaacgauggaaacggaacaugguucugucaagcaccgcggaaagcaccgugcucuccugca
.......(((....)))(((((((((...(((((((((..((((((((..((............))..))))))))..)))))))))...))))))).)).(((......)))

Structure

gaccagucgcuuaugcg  -       uUU         CU        gg  gaacg 
                 gg gcuuucc   GUGCUUGAU  AACCAUGU  ug     a
                 || |||||||   |||||||||  ||||||||  ||      
                 cc cgaaagg   cacgaacug  uugguaca  gc     u
----acguccucucgug  a       cgc         uc        ag  aaagg 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr5: 171408121-171408233 [-]

Mature ppy-miR-218

• Accession: MIMAT0002569
• Description: Pongo pygmaeus ppy-miR-218 mature miRNA
• Sequence: 28 - UUGUGCUUGAUCUAACCAUGU - 48
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24