Stem-loop ppa-mir-221

Accession

MI0002895

Description

Pan paniscus ppa-mir-221 precursor miRNA

Sequence

ugaacauccaggucuggggcaugaaccuggcauacaauguagauuucuguguucguuaggcaacAGCUACAUUGUCUGCUGGGUUUCaggcuaccuggaaacauguucuc
.((((((((((((....(((.(((((((((((.(((((((((....(((((((.....))).))))))))))))).))))))).)))).))))))))))....)))))..

Structure

-u     ----       cugg   a    -       u         auuu    -   c 
  gaaca    uccaggu    ggc ugaa ccuggca acaauguag    cugu guu g
  |||||    |||||||    ||| |||| ||||||| |||||||||    |||| ||| u
  cuugu    aggucca    ucg aCUU GGGUCGU UGUUACAUC    GAca cgg u
cu     acaa       ----   g    U       C         ----    a   a 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 46051737-46051846 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppa-mir-221

Mature ppa-miR-221

• Accession: MIMAT0002586
• Description: Pan paniscus ppa-miR-221 mature miRNA
• Sequence: 65 - AGCUACAUUGUCUGCUGGGUUUC - 87
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24