Stem-loop ppy-mir-223

Accession

MI0002900

Description

Pongo pygmaeus ppy-mir-223 precursor miRNA

Sequence

ccuggccuccugcagugccacgcuccguguauuugacaagcugaguuagacacuccgugugguagagUGUCAGUUUGUCAAAUACCCCaagugcggcacaugcuuaccag
.((((......((((((((.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).))))).)))...))))

Structure

c    ccuccu   -     a    cc u              gaguua       cgu 
 cugg      gca gugcc cgcu  g guauuugacaagcu      gacacuc   g
 ||||      ||| ||||| ||||  | ||||||||||||||      |||||||   u
 gacc      cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
-    ---auu   a     c    aC C              ------       aug 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 63380851-63380960 [+]

Mature ppy-miR-223

• Accession: MIMAT0002591
• Description: Pongo pygmaeus ppy-miR-223 mature miRNA
• Sequence: 68 - UGUCAGUUUGUCAAAUACCCC - 88
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24