Stem-loop sla-mir-223

Accession

MI0002901

Description

Saguinus labiatus sla-mir-223 precursor miRNA

Sequence

ccuggccuccugcagugccacgcuccguguauuugacaagcugaguuggacacuccgugugguagagUGUCAGUUUGUCAAAUACCCCaagugcgacacaugcuuagcag
....((.....((((((.(.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).).))).)))...))..

Structure

ccug  cuccu   -   c a    cc u              gaguug       cgu 
    gc     gca gug c cgcu  g guauuugacaagcu      gacacuc   g
    ||     ||| ||| | ||||  | ||||||||||||||      |||||||   u
    cg     cgu cac g guga  C CAUAAACUGUUUGA      CUGUgag   g
--ga  --auu   a   a c    aC C              ------       aug 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

Unknown

Mature sla-miR-223

• Accession: MIMAT0002592
• Description: Saguinus labiatus sla-miR-223 mature miRNA
• Sequence: 68 - UGUCAGUUUGUCAAAUACCCC - 88
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24