miRBase entry: ppa-mir-16

Stem-loop ppa-mir-16

Accession

MI0002954

Description

Pan paniscus ppa-mir-16 precursor miRNA

Sequence

gucagcagugccuUAGCAGCACGUAAAUAUUGGCGuuaagauucuaaaauuaucuccaguauuaacugugcugcugaaguaagguugac
((((((..(((.((((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))).)))..))))))

Structure

      ag   c          -  A        C u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr13: 49936089-49936177 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppa-mir-16

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppa-miR-16

Accession	MIMAT0002647
Description	Pan paniscus ppa-miR-16 mature miRNA
Sequence	14 - UAGCAGCACGUAAAUAUUGGCG - 35
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24