miRBase entry: ppa-mir-17

Stem-loop ppa-mir-17

Accession

MI0002983

Description

Pan paniscus ppa-mir-17 precursor miRNA

Sequence

gucagaauaauguCAAAGUGCUUACAGUGCAGGUAGUgauaugugcaucuACUGCAGUGAAGGCACUUGUagcauuauggugac
((((..(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))..))))

Structure

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr13: 91707328-91707411 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppa-mir-17

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppa-miR-17-5p

Accession	MIMAT0002679
Description	Pan paniscus ppa-miR-17-5p mature miRNA
Sequence	14 - CAAAGUGCUUACAGUGCAGGUAGU - 37
Evidence	not_experimental

Mature ppa-miR-17-3p

Accession	MIMAT0002680
Description	Pan paniscus ppa-miR-17-3p mature miRNA
Sequence	51 - ACUGCAGUGAAGGCACUUGU - 70
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24