miRBase entry: ppy-mir-17

Stem-loop ppy-mir-17

Accession

MI0002989

Description

Pongo pygmaeus ppy-mir-17 precursor miRNA

Literature search

1 open access papers mention ppy-mir-17
(1 sentences)

Sequence

gucagaauaauguCAAAGUGCUUACAGUGCAGGUAGUgauacgugcaucuACUGCAGUGAAGGCACUUGUagcauuauggugac
((((..(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))..))))

Structure

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  c
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr13: 93460030-93460113 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppy-mir-17

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-17-5p

Accession	MIMAT0002686
Description	Pongo pygmaeus ppy-miR-17-5p mature miRNA
Sequence	14 - CAAAGUGCUUACAGUGCAGGUAGU - 37
Evidence	not_experimental

Mature ppy-miR-17-3p

Accession	MIMAT0002687
Description	Pongo pygmaeus ppy-miR-17-3p mature miRNA
Sequence	51 - ACUGCAGUGAAGGCACUUGU - 70
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24