miRBase entry: ppy-mir-92-1

Stem-loop ppy-mir-92-1

Accession

MI0002994

Description

Pongo pygmaeus ppy-mir-92-1 precursor miRNA

Sequence

cuuucuacacagguugggaucaguugcaaugcuguguuucuguauggUAUUGCACUUGUCCCGGCCUGUugaguuugg
....((..((((((((((((.(((.(((((((((((......)))))))))))))).))))))))))))..)).....

Structure

-cuuu  ac            c   u           uu 
     cu  acagguugggau agu gcaaugcugug  u
     ||  |||||||||||| ||| |||||||||||   
     ga  UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu  gu            U   -           gu

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr13: 93460739-93460816 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppy-mir-92-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-92

Accession	MIMAT0002692
Description	Pongo pygmaeus ppy-miR-92 mature miRNA
Sequence	48 - UAUUGCACUUGUCCCGGCCUGU - 69
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24