miRBase entry: ptr-mir-17

Stem-loop ptr-mir-17


Accession
MI0002995
Description
Pan troglodytes ptr-mir-17 precursor miRNA

Literature search
1 open access papers mention ptr-mir-17
(1 sentences)

Sequence

gucagaauaauguCAAAGUGCUUACAGUGCAGGUAGUgauaugugcaucuACUGCAGUGAAGGCACUUGUagcauuauggugac
((((..(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))..))))

Structure
    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 


Annotation confidence High
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr13: 77006711-77006794 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ptr-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-17-5p

Accession MIMAT0002693
Description Pan troglodytes ptr-miR-17-5p mature miRNA
Sequence 14 - CAAAGUGCUUACAGUGCAGGUAGU - 37
Evidence not_experimental

Mature ptr-miR-17-3p

Accession MIMAT0002694
Description Pan troglodytes ptr-miR-17-3p mature miRNA
Sequence 51 - ACUGCAGUGAAGGCACUUGU - 70
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24