Stem-loop ppy-mir-215

Accession

MI0003029

Description

Pongo pygmaeus ppy-mir-215 precursor miRNA

Sequence

aucauucagaaaugguauacaggaaaAUGACCUAUGAAUUGACAGACaauacagcugaguuugucugucauuucuuuaggccaauauucuguacaacugugcuacuucaa
........(((.((((((((((((...((.((((.(((.((((((((((.((......)))))))))))).)))..)))).))...))))))......)))))).)))..

Structure

aucauuca   a      ------      aaA  A    -U   U          u  ag 
        gaa ugguau      acagga   UG CCUA  GAA UGACAGACaa ac  c
        ||| ||||||      ||||||   || ||||  ||| |||||||||| ||   
        cuu aucgug      ugucuu   ac ggau  cuu acugucuguu ug  u
------aa   c      ucaaca      aua  c    uu   u          -  ag 

Annotation confidence Low

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 29611880-29611989 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-215

Mature ppy-miR-215

• Accession: MIMAT0002732
• Description: Pongo pygmaeus ppy-miR-215 mature miRNA
• Sequence: 27 - AUGACCUAUGAAUUGACAGAC - 47
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24