miRBase entry: ggo-mir-24

Stem-loop ggo-mir-24

Accession

MI0003037

Description

Gorilla gorilla ggo-mir-24 precursor miRNA

Literature search

2 open access papers mention ggo-mir-24
(2 sentences)

Sequence

17150 reads, 1218.0 reads per million, 4 experiments

cucugccucccGUGCCUACUGAGCUGAAACACAguugguuuguguacacUGGCUCAGUUCAGCAGGAACAGgg
(((((..(((.((....(((((((((..((((((.....))))))....)))))))))...)).))).)))))

Structure

     cc   c  GCCU         --AA      u 
cucug  ucc GU    ACUGAGCUG    ACACAg u
|||||  ||| ||    |||||||||    |||||| g
ggGAC  AGG CG    UGACUCGGU    uguguu g
     -A   A  -ACU         caca      u

Annotation confidence Medium

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr19: 13613998-13614070 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ggo-mir-24

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-24-5p

Accession	MIMAT0061272
Description	Gorilla gorilla ggo-miR-24-5p mature miRNA
Sequence	12 - GUGCCUACUGAGCUGAAACACA - 33
Evidence	experimental

Mature ggo-miR-24-3p

Accession	MIMAT0002740
Description	Gorilla gorilla ggo-miR-24-3p mature miRNA
Sequence	50 - UGGCUCAGUUCAGCAGGAACAG - 71
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24