miRBase entry: ppy-mir-27a

Stem-loop ppy-mir-27a

Accession

MI0003046

Description

Pongo pygmaeus ppy-mir-27a precursor miRNA

Sequence

cugaggagcacggggcuuagcugcuugugagcaggguccacaccaaguugugUUCACAGUGGCUAAGUUCCGCCccccag
(((.((.(..(((((((((((((((.(((((((.((.(........))).))))))))))))))))))))))..))))))

Structure

   a  a ca               u       g  u cac 
cug gg g  cggggcuuagcugcu gugagca gg c   a
||| || |  ||||||||||||||| ||||||| || |    
gac cc c  GCCUUGAAUCGGUGA CACUUgu uu g   c
   -  - CC               -       g  - aac

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

NW_002966782.1: 23150-23229 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppy-mir-27a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-27a

Accession	MIMAT0002748
Description	Pongo pygmaeus ppy-miR-27a mature miRNA
Sequence	53 - UUCACAGUGGCUAAGUUCCGCC - 74
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24