miRBase entry: ppy-mir-24-2

Stem-loop ppy-mir-24-2

Accession

MI0003047

Description

Pongo pygmaeus ppy-mir-24-2 precursor miRNA

Sequence

cucugccucccgugccuacugagcugaaacacaguugguuuguguacacUGGCUCAGUUCAGCAGGAACAGgg
(((((..(((.((....(((((((((..((((((.....))))))....)))))))))...)).))).)))))

Structure

     cc   c  gccu         --aa      u 
cucug  ucc gu    acugagcug    acacag u
|||||  ||| ||    |||||||||    |||||| g
ggGAC  AGG CG    UGACUCGGU    uguguu g
     -A   A  -ACU         caca      u

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

NW_002966782.1: 22997-23069 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppy-mir-24-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-24-3p

Accession	MIMAT0002339
Description	Pongo pygmaeus ppy-miR-24-3p mature miRNA
Sequence	50 - UGGCUCAGUUCAGCAGGAACAG - 71
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24